1339 lines
33 KiB
Java
1339 lines
33 KiB
Java
/****************************************************************************
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* NCSA HDF *
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* National Comptational Science Alliance *
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* University of Illinois at Urbana-Champaign *
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* 605 E. Springfield, Champaign IL 61820 *
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* *
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* For conditions of distribution and use, see the accompanying *
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* java-hdf5/COPYING file. *
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* *
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****************************************************************************/
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package ncsa.hdf.hdf5lib.test;
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import java.awt.*;
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import java.awt.event.*;
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import java.io.*;
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import ncsa.hdf.hdf5lib.*;
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import ncsa.hdf.hdf5lib.exceptions.*;
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public class TestLongRead implements TestModule
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{
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private String FILE_ROOT = null;
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String dbgInfo;
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boolean testResult = false;
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public TestLongRead()
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{
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}
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public boolean setUp( String workingDir, boolean cleanFilesAtStart) {
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FILE_ROOT = workingDir;
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return true;
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}
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public boolean cleanUp( boolean saveFiles )
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{
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try {
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H5.H5close();
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} catch (HDF5Exception ex) {
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dbgInfo += "\nH5close(): FAILED "+ex;
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return false;
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}
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return true;
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}
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public String getTestName() {
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String desc = "Test Long/long/int/short/byte write & read";
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return desc;
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}
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public String getTestDescription() {
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String desc = "Test long and Long data types, write and read all smaller types.";
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return desc;
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}
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public void runTest() {
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testResult = false;
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boolean res;
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int ntests = 8;
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int passed = 0;
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dbgInfo = "\n\n========== Test Write & read 2D Long/Long flattened ==========";
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if(testLongLongFlat()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/long Array ==========";
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if(testLongLongArray()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/Int flattened ==========";
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if(testLongIntFlat()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/Int Array ==========";
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if(testLongIntArray()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/byte Flat ==========";
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if(testLongByteFlat()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/byte Array ==========";
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if(testLongByteArray()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/short Flat ==========";
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if(testLongShortFlat()) {
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passed++;
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}
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dbgInfo += "\n\n========== Test Write & read 2D Long/short Array ==========";
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if(testLongShortArray()) {
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passed++;
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}
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dbgInfo += "\n\n========== Long/long/int/short/byte tests complete: "+passed+" of "+ntests+" passed ==========";
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testResult = (passed == ntests);
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}
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public boolean testPassed()
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{
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return testResult;
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}
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public String getVerboseResult()
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{
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return dbgInfo;
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}
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/**
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* Test
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*/
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private boolean testLongLongFlat()
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{
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String fileName = FILE_ROOT+"LongLongFlat.h5";
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String dataset1Name = "longArray";
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String dataset2Name = "LongArray";
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int nx = 100;
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int ny = 200;
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int rank = 2;
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int status;
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int errs = 0;
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int i, j;
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int file, dataset1, dataset2;
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int tfile, tdataset1, tdataset2;
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int datatype2, dataspace2; /* handles */
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int datatype1, dataspace1; /* handles */
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long[] dimsf = {100, 200}; /* dataset dimensions */
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Long[] data1 = new Long[nx*ny]; /* data to write */
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Long[] outData1 = new Long[nx*ny];
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Long[] outData3 = new Long[nx*ny];
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long[] data2 = new long[nx*ny]; /* data to write */
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long[] outData2 = new long[nx*ny];
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long[] outData4 = new long[nx*ny];
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// Data and output buffer initialization.
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for (j = 0; j < nx; j++) {
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for (i = 0; i < ny; i++) {
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data1[j*ny+i] = new Long(j*nx+i);
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data2[j*ny+i] = (long)(j*nx+i);
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}
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}
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tfile = -1;
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try {
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tfile = H5.H5Fopen(fileName,
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HDF5Constants.H5F_ACC_RDONLY,
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HDF5Constants.H5P_DEFAULT);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
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return false;
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}
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try {
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tdataset1 = H5.H5Dopen(tfile, dataset1Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead Long data as Long";
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try {
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status = H5.H5Dread(tdataset1,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: failed. "+ex;
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return false;
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}
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for (j = 0; (j < nx) && (errs < 10); j++)
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{
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for (i = 0; (i < ny) && (errs < 10); i++) {
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if (!outData1[j*ny+i].equals(data1[j*ny+i])) {
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errs++;
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if (errs > 10 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData1[j*ny+i];
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errs++;
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}
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}
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}
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}
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try {
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H5.H5Dclose(tdataset1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
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return false;
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}
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try {
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tdataset1 = H5.H5Dopen(tfile, dataset1Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead Long data as int";
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try {
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status = H5.H5Dread(tdataset1,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData2);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: failed. "+ex;
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return false;
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}
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for (j = 0; (j < nx) && (errs < 20); j++)
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{
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for (i = 0; (i < ny) && (errs < 20); i++) {
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if (outData2[j*ny+i] != data1[j*ny+i].longValue()) {
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errs++;
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if (errs > 20 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData2[j*ny+i];
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}
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}
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}
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}
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try {
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H5.H5Dclose(tdataset1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
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return false;
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}
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try {
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tdataset2 = H5.H5Dopen(tfile, dataset2Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() Failed, dataset2 read 1 exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead long data as long";
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try {
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status = H5.H5Dread(tdataset2,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData4);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: failed. "+ex;
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return false;
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}
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for (j = 0; (j < nx) && (errs < 30); j++)
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{
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for (i = 0; (i < ny) && (errs < 30); i++) {
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if (outData4[j*ny+i] != data2[j*ny+i]) {
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errs++;
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if (errs > 30 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data2[j*nx+i]+" read back as "+outData2[j*nx+i];
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errs++;
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}
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}
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}
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}
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try {
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H5.H5Dclose(tdataset2);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: dataset 2 read 1 failed. "+ex;
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return false;
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}
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try {
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tdataset2 = H5.H5Dopen(tfile, dataset2Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\nH5Dopen() dataset2 read 2 Failed, exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead long data as Long";
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try {
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status = H5.H5Dread(tdataset2,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData3);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: dataset 2 read 2 failed. "+ex;
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return false;
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}
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for (j = 0; (j < nx) && (errs < 40); j++)
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{
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for (i = 0; (i < ny) && (errs < 40); i++) {
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if (outData3[j*nx+i].longValue() != data2[j*nx+i]) {
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errs++;
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if (errs > 40 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data2[j*nx+i]+" read back as "+outData3[j*nx+i];
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}
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}
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}
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}
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try {
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H5.H5Dclose(tdataset2);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: dataset 2 read 2 failed. "+ex;
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return false;
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}
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try {
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H5.H5Fclose(tfile);
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} catch (HDF5Exception ex) {
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dbgInfo += "\nH5Fclose(): FAILED "+ex;
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return false;
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}
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if (errs == 0) {
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dbgInfo += "\nLongLongFlat(): OK ";
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return true;
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} else {
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dbgInfo += "\nLongLongFlat(): at least "+errs+" bad data errs ";
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return false;
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}
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}
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private boolean testLongLongArray()
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{
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String fileName = FILE_ROOT+"LongLongArray.h5";
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String dataset1Name = "longArray";
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String dataset2Name = "LongArray";
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int nx = 100;
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int ny = 200;
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int rank = 2;
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int status;
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int errs = 0;
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int i, j;
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int file, dataset1, dataset2;
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int tfile, tdataset1, tdataset2;
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int datatype2, dataspace2; /* handles */
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int datatype1, dataspace1; /* handles */
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long[] dimsf = {100, 200}; /* dataset dimensions */
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Long[][] data1 = new Long[nx][ny]; /* data to write */
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Long[][] outData1 = new Long[nx][ny];
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Long[][] outData3 = new Long[nx][ny];
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long[][] data2 = new long[nx][ny]; /* data to write */
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long[][] outData2 = new long[nx][ny];
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long[][] outData4 = new long[nx][ny];
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// Data and output buffer initialization.
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for (j = 0; j < nx; j++) {
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for (i = 0; i < ny; i++) {
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data1[j][i] = new Long(j*nx+i);
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data2[j][i] = (long)(j*nx+i);
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}
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}
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tfile = -1;
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try {
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tfile = H5.H5Fopen(fileName,
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HDF5Constants.H5F_ACC_RDONLY,
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HDF5Constants.H5P_DEFAULT);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
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return false;
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}
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try {
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tdataset1 = H5.H5Dopen(tfile, dataset1Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead Long data as Long";
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try {
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status = H5.H5Dread(tdataset1,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: failed. "+ex;
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return false;
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}
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for (j = 0; (j < nx) && (errs < 10); j++)
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{
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for (i = 0; (i < ny) && (errs < 10); i++) {
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if (!outData1[j][i].equals(data1[j][i])) {
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errs++;
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if (errs > 10 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData1[j][i];
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}
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}
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}
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}
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try {
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H5.H5Dclose(tdataset1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;return false;}
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try {
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tdataset1 = H5.H5Dopen(tfile, dataset1Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
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return false;
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}
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dbgInfo += "\nRead Long data as long";
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try {
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status = H5.H5Dread(tdataset1,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT,
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outData2);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dread: failed. "+ex;
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return false;
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}
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|
|
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for (j = 0; (j < nx) && (errs < 20); j++)
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{
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for (i = 0; (i < ny) && (errs < 20); i++) {
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if (outData2[j][i] != data1[j][i].longValue()) {
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errs++;
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if (errs > 20 ) {
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData2[j][i];
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}
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}
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}
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}
|
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try {
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H5.H5Dclose(tdataset1);
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} catch (Exception ex) {
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dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
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return false;
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}
|
|
|
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try {
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tdataset2 = H5.H5Dopen(tfile, dataset2Name);
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} catch (HDF5Exception ex) {
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dbgInfo += "\n\nH5Dopen() Failed, dataset2 read 1 exception: "+ex;
|
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return false;
|
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}
|
|
|
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dbgInfo += "\nRead long data as long";
|
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try {
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status = H5.H5Dread(tdataset2,
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H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
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HDF5Constants.H5S_ALL,
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|
HDF5Constants.H5S_ALL,
|
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HDF5Constants.H5P_DEFAULT,
|
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outData4);
|
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} catch (Exception ex) {
|
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dbgInfo += "\nH5Dread: failed. "+ex;
|
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return false;
|
|
}
|
|
|
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for (j = 0; (j < nx) && (errs < 30); j++)
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{
|
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for (i = 0; (i < ny) && (errs < 30); i++) {
|
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if (outData4[j][i] != data2[j][i]) {
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errs++;
|
|
if (errs > 30 ) {
|
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dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data2[j][i]+" read back as "+outData2[j][i];
|
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}
|
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}
|
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}
|
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}
|
|
|
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try {
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H5.H5Dclose(tdataset2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset 2 read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
|
|
try {
|
|
tdataset2 = H5.H5Dopen(tfile, dataset2Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Dopen() dataset2 read 2 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead long data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset2,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData3);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: dataset 2 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 30); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 30); i++) {
|
|
if (outData3[j][i].longValue() != data2[j][i]) {
|
|
errs++;
|
|
if (errs > 30 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data2[j][i]+" read back as "+outData3[j][i];
|
|
errs++;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset 2 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongLongArray(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongLongArray(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
private boolean testLongIntFlat()
|
|
{
|
|
String fileName = FILE_ROOT+"LongIntFlat.h5";
|
|
String dataset1Name = "intArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2; /* handles */
|
|
int datatype1, dataspace1; /* handles */
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
int[] data1 = new int[nx*ny]; /* data to write */
|
|
Long[] outData1 = new Long[nx*ny];
|
|
long[] outData2 = new long[nx*ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j*ny+i] = (int)(j*nx+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead int data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j*ny+i].intValue() !=( data1[j*ny+i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData1[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead int data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 20); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 20); i++) {
|
|
if (outData2[j*ny+i] != data1[j*ny+i]) {
|
|
errs++;
|
|
if (errs > 20 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData2[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongIntFlat(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongIntFlat(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
private boolean testLongIntArray()
|
|
{
|
|
String fileName = FILE_ROOT+"LongIntArray.h5";
|
|
String dataset1Name = "intArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2;
|
|
int datatype1, dataspace1;
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
int[][] data1 = new int[nx][ny]; /* data to write */
|
|
Long[][] outData1 = new Long[nx][ny];
|
|
long[][] outData2 = new long[nx][ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j][i] = (int)(j*nx+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead int data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j][i].intValue() !=( data1[j][i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData1[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead int data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData2[j][i] != data1[j][i]) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData2[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongIntArray(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongIntArray(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
private boolean testLongByteFlat()
|
|
{
|
|
String fileName = FILE_ROOT+"longByteFlat.h5";
|
|
String dataset1Name = "byteArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2; /* handles */
|
|
int datatype1, dataspace1; /* handles */
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
byte[] data1 = new byte[nx*ny]; /* data to write */
|
|
Long[] outData1 = new Long[nx*ny];
|
|
long[] outData2 = new long[nx*ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j*ny+i] = (byte)(j+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead byte data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j*ny+i].byteValue() !=( data1[j*ny+i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData1[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead byte data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 20); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 20); i++) {
|
|
if (outData2[j*ny+i] != data1[j*ny+i]) {
|
|
errs++;
|
|
if (errs > 20 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData2[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongByteFlat(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongByteFlat(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
private boolean testLongByteArray()
|
|
{
|
|
String fileName = FILE_ROOT+"longByteArray.h5";
|
|
String dataset1Name = "byteArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2; /* handles */
|
|
int datatype1, dataspace1; /* handles */
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
byte[][] data1 = new byte[nx][ny]; /* data to write */
|
|
Long[][] outData1 = new Long[nx][ny];
|
|
long[][] outData2 = new long[nx][ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j][i] = (byte)(j+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead byte data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j][i].byteValue() !=( data1[j][i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData1[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead byte data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 20); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 20); i++) {
|
|
if (outData2[j][i] != data1[j][i]) {
|
|
errs++;
|
|
if (errs > 20 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData2[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongByteArray(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongByteArray(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
|
|
private boolean testLongShortFlat()
|
|
{
|
|
String fileName = FILE_ROOT+"longShortFlat.h5";
|
|
String dataset1Name = "shortArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2; /* handles */
|
|
int datatype1, dataspace1; /* handles */
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
short[] data1 = new short[nx*ny]; /* data to write */
|
|
Long[] outData1 = new Long[nx*ny];
|
|
long[] outData2 = new long[nx*ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j*ny+i] = (short)(j*ny+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead short data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j*ny+i].shortValue() !=( data1[j*ny+i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData1[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead short data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 20); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 20); i++) {
|
|
if (outData2[j*ny+i] != data1[j*ny+i]) {
|
|
errs++;
|
|
if (errs > 20 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j*ny+i]+" read back as "+outData2[j*ny+i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs == 0) {
|
|
dbgInfo += "\nLongShortFlat(): OK ";
|
|
return true;
|
|
} else {
|
|
dbgInfo += "\nLongShortFlat(): at least "+errs+" bad data errs ";
|
|
return false;
|
|
}
|
|
}
|
|
|
|
|
|
private boolean testLongShortArray()
|
|
{
|
|
String fileName = FILE_ROOT+"longShortArray.h5";
|
|
String dataset1Name = "shortArray";
|
|
String dataset2Name = "longArray";
|
|
String dataset3Name = "LongArray";
|
|
int nx = 100;
|
|
int ny = 200;
|
|
int rank = 2;
|
|
int status;
|
|
int errs = 0;
|
|
int i, j;
|
|
int file, dataset1, dataset2;
|
|
int tfile, tdataset1, tdataset2;
|
|
int datatype2, dataspace2; /* handles */
|
|
int datatype1, dataspace1; /* handles */
|
|
long[] dimsf = {100, 200}; /* dataset dimensions */
|
|
short[][] data1 = new short[nx][ny]; /* data to write */
|
|
Long[][] outData1 = new Long[nx][ny];
|
|
long[][] outData2 = new long[nx][ny];
|
|
|
|
// Data and output buffer initialization.
|
|
for (j = 0; j < nx; j++) {
|
|
for (i = 0; i < ny; i++) {
|
|
data1[j][i] = (short)(j*nx+i);
|
|
}
|
|
}
|
|
|
|
tfile = -1;
|
|
try {
|
|
tfile = H5.H5Fopen(fileName,
|
|
HDF5Constants.H5F_ACC_RDONLY,
|
|
HDF5Constants.H5P_DEFAULT);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Fopen() second open Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead short data as Long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 10); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 10); i++) {
|
|
if (outData1[j][i].shortValue() !=( data1[j][i])) {
|
|
errs++;
|
|
if (errs > 10 ) {
|
|
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData1[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: dataset1 after read 1 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
tdataset1 = H5.H5Dopen(tfile, dataset1Name);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\n\nH5Dopen() dataset1 after read 1 Failed, exception: "+ex;
|
|
return false;
|
|
}
|
|
|
|
dbgInfo += "\nRead short data as long";
|
|
try {
|
|
status = H5.H5Dread(tdataset1,
|
|
H5.J2C(HDF5CDataTypes.JH5T_STD_I64BE),
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5S_ALL,
|
|
HDF5Constants.H5P_DEFAULT,
|
|
outData2);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dread: failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
for (j = 0; (j < nx) && (errs < 20); j++)
|
|
{
|
|
for (i = 0; (i < ny) && (errs < 20); i++) {
|
|
if (outData2[j][i] != data1[j][i]) {
|
|
errs++;
|
|
if (errs > 20 ) {
|
|
dbgInfo += "\n* bad data at: ["+i+"]["+j+"] original: "+data1[j][i]+" read back as "+outData2[j][i];
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
try {
|
|
H5.H5Dclose(tdataset1);
|
|
} catch (Exception ex) {
|
|
dbgInfo += "\nH5Dclose: tdataset1 read 2 failed. "+ex;
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
H5.H5Fclose(tfile);
|
|
} catch (HDF5Exception ex) {
|
|
dbgInfo += "\nH5Fclose(): FAILED "+ex;
|
|
return false;
|
|
}
|
|
if (errs > 0) {
|
|
dbgInfo += "\nLongShortArray(): at least "+errs+" errors";
|
|
return false;
|
|
} else {
|
|
dbgInfo += "\nLongShortArray(): OK ";
|
|
return true;
|
|
}
|
|
}
|
|
}
|