Merge branch 'master_14.1.1' into omaha_14.1.1

Conflicts:
	nativeLib/files.native/files.native.ecl
	nativeLib/ncep_grib2module/.cproject
	nativeLib/rary.cots.g2clib/.project
	nativeLib/rary.cots.g2clib/g2_unpack3.c
	rpms/awips2.core/Installer.python/component.spec
	rpms/awips2.core/Installer.python/nativeLib/x86_64/grib2.so
	rpms/awips2.core/Installer.python/nativeLib/x86_64/libjasper.so
	rpms/awips2.core/Installer.python/nativeLib/x86_64/libjasper.so.1

Former-commit-id: c76c856340 [formerly 412bcb0f21b7385a170d14b3a88dd67c91a301a2]
Former-commit-id: 665911b033

cave/build/static/common/cave/etc/bundles/StationPlot.xml

@@ -52,7 +52,7 @@
 					<resourceData xsi:type="plotResourceData" plotSource="METAR Plot"
 						plotModelFile="stdObsDesign.svg" spiFile="basemaps/MTR.spi"
 						isUpdatingOnMetadataOnly="true" retrieveData="false"
-						isRequeryNecessaryOnTimeMatch="true" pixelSizeHint="45">
+						isRequeryNecessaryOnTimeMatch="true" isTopOfTheHour="true" pixelSizeHint="45">
 						<binOffset posOffset="1800" negOffset="1800" virtualOffset="0"/>
 						<metadataMap>
 							<mapping key="reportType">

cave/build/static/common/cave/etc/gfe/userPython/utilities/SmartScript.py

@@ -46,6 +46,7 @@
 #                                                 Cleaned up some constants
 #    Jun 21, 2013    14983         ryu            Fixed encodeEditArea() to evaluate query
 #                                                 when necessary
+#    Oct 07, 2013    2424          randerso       remove use of pytz
 #
 ########################################################################
 import types, string, time, sys
@@ -1479,14 +1480,14 @@ class SmartScript(BaseTool.BaseTool):
 
             This should be used instead of time.localtime()
         '''
-        from pytz import timezone
+        import dateutil.tz
 
         if tz is None:
             tzname = self.__dataMgr.getClient().getSiteTimeZone()
-            tz = timezone(tzname)
+            tz = dateutil.tz.gettz(tzname)
 
-        utczone = timezone('UTC')
-        gmdt = utczone.localize(self._gmtime(date))
+        utczone = dateutil.tz.gettz('UTC')
+        gmdt = self._gmtime(date).replace(tzinfo=utczone)
         tzdt = gmdt.astimezone(tz)
         return tzdt
 

cave/build/static/common/cave/etc/ncep/AttributeSetGroups/ModelFcstGridContours/1000-500_thkn.attr

@@ -17,7 +17,6 @@ FINT=
 FLINE=
 HILO=
 HLSYM=
-CLRBAR=0
 WIND=
 TITLE=5/-1/~ 1000-500 MB THICKNESS!0
 COLORS=2                                                                       

cave/com.raytheon.viz.pointdata/src/com/raytheon/viz/pointdata/rsc/PlotResource2.java

@@ -349,19 +349,7 @@ public class PlotResource2 extends
                     plots.put(normTime, list);
                 }
                 list.add(info);
-                
-                // Sort this data in "backwards" so that the most recent observation 
-                // for a particular station display correctly
-                Collections.sort(list, new Comparator<PlotInfo>() {
-                
-                @Override
-                public int compare(PlotInfo o1, PlotInfo o2) {                         	  
-                       return o1.dataTime.compareTo(o2.dataTime);
-                     }
-                });
-                
-                Collections.reverse(list);
-                
+
             }
         }
 
@@ -373,6 +361,19 @@ public class PlotResource2 extends
             DataTime time = entry.getKey();
             List<PlotInfo> info = entry.getValue();
             FrameInformation frameInfo = frameMap.get(time);
+
+            // Sort this data in "backwards" so that the most recent observation 
+            // for a particular station display correctly
+            if (info.size() > 1) {
+                Collections.sort(info, new Comparator<PlotInfo>() {
+
+                @Override
+                public int compare(PlotInfo o1, PlotInfo o2) {                         	  
+                   return o2.dataTime.compareTo(o1.dataTime);
+                 }
+                });
+            }
+
             if (frameInfo != null) {
                 Map<String, Station> stationMap = frameInfo.stationMap;
                 for (PlotInfo plot : info) {

cave/com.raytheon.viz.texteditor/src/com/raytheon/viz/texteditor/dialogs/AWIPSHeaderBlockDlg.java

@@ -96,7 +96,8 @@ import com.raytheon.viz.ui.dialogs.ICloseCallback;
  * 07/26/2012   15171       rferrel     Disable editor's send and clear AFOS PIL fields when
  *                                      invalid product Id and user want to edit it anyway.
  * 09/20/2012   1196        rferrel     Changing dialogs being called to not block.
- * 11/26/2012	14526		mgamazaychikov	Added traverse listener for RETURN key
+ * 11/26/2012	14526	mgamazaychikov	Added traverse listener for RETURN key
+ * 10/07/2012	16664	mgamazaychikov	Added padProdDesignatorText method
  * </pre>
  * 
  * @author lvenable
@@ -411,21 +412,7 @@ public class AWIPSHeaderBlockDlg extends CaveSWTDialog implements
 
             @Override
             public void focusLost(FocusEvent e) {
-                StringBuilder sb = new StringBuilder(prodDesignatorTF.getText()
-                        .trim());
-                if (sb.length() > 0) {
-                    // Pad field with trailing spaces.
-                    while (sb.length() < 3) {
-                        sb.append(' ');
-                    }
-
-                    // Only trigger the modification listener when there is a
-                    // real change.
-                    String value = sb.toString();
-                    if (!value.equals(prodDesignatorTF.getText())) {
-                        prodDesignatorTF.setText(value);
-                    }
-                }
+            	padProdDesignatorText(prodDesignatorTF.getText());
             }
 
             @Override
@@ -462,7 +449,23 @@ public class AWIPSHeaderBlockDlg extends CaveSWTDialog implements
         }
     }
 
-    /**
+    protected void padProdDesignatorText(String prodDesignatorText) {
+		StringBuilder sb = new StringBuilder(prodDesignatorText.trim());
+		if (sb.length() > 0) {
+			// Pad field with trailing spaces.
+			while (sb.length() < 3) {
+				sb.append(' ');
+			}
+			// Only trigger the modification listener when there is a
+			// real change.
+			String value = sb.toString();
+			if (!value.equals(prodDesignatorText)) {
+				prodDesignatorTF.setText(value);
+			}
+		}
+	}
+
+	/**
      * Create the addressee control fields.
      */
     private void createAddresseeFields() {
@@ -1041,6 +1044,7 @@ public class AWIPSHeaderBlockDlg extends CaveSWTDialog implements
             @Override
             public void keyTraversed(TraverseEvent event) {
                 if (event.detail == SWT.TRAVERSE_RETURN) {
+                	padProdDesignatorText(prodDesignatorTF.getText());
                 	enterBtnPressed();
                 }
             }

cave/com.raytheon.viz.warngen/src/com/raytheon/viz/warngen/gis/PolygonUtil.java

@@ -73,6 +73,7 @@ import com.vividsolutions.jts.geom.prep.PreparedGeometryFactory;
  *                                     the call to removeIntersectedSeg() with a call to adjustVertex(); updated 
  *                                     removeDuplicateCoordinate(), computeCoordinate(), adjustPolygon() prolog, and
  *                                     removeOverlaidLinesegments(); added alterVertexes() and calcShortestDistance().
+ * 10/01/2013  DR 16632   Qinglu Lin   Fixed the bug in for loop range.
  * </pre>
  * 
  * @author mschenke
@@ -1102,6 +1103,9 @@ public class PolygonUtil {
         if (verts == null) {
             return null;
         }
+        if (verts.length <= 3)
+            return verts;
+
         Set<Coordinate> coords = new LinkedHashSet<Coordinate>();
         for (Coordinate c : verts)
             coords.add(c);
@@ -1300,7 +1304,7 @@ public class PolygonUtil {
                     // of a straight line segment
                     coords = new Coordinate[coords.length - 1];
                     if (i == m - 2) {
-                        for (int j = 1; j < m - 2; j++) {
+                        for (int j = 1; j <= m - 2; j++) {
                             coords[j-1] = new Coordinate(expandedCoords[j]);
                         }
                         coords[coords.length-1] = new Coordinate(coords[0]);

cave/com.raytheon.viz.warngen/src/com/raytheon/viz/warngen/gui/WarngenDialog.java

@@ -149,6 +149,7 @@ import com.vividsolutions.jts.geom.Polygon;
  *  Aug  6, 2013 2243        jsanchez    Refreshed the follow up list every minute.
  *  Aug 15, 2013 DR 16418    D. Friedman Make dialog visibility match editable state.
  *  Sep 17, 2013 DR 16496    D. Friedman Make editable state more consistent.
+ *  Oct 01, 2013 DR16612 m.gamazaychikov Fixed inconsistencies with track locking and updateListSelected method
  * </pre>
  * 
  * @author chammack
@@ -259,6 +260,8 @@ public class WarngenDialog extends CaveSWTDialog implements
 
     private boolean polygonLocked = false;
 
+    private boolean trackLocked = false;
+
     private int totalSegments = 0;
 
     private String damBreakInstruct = null;
@@ -1066,7 +1069,7 @@ public class WarngenDialog extends CaveSWTDialog implements
         if (((followupData == null) || ((WarningAction.valueOf(followupData
                 .getAct()) == WarningAction.CON) && warngenLayer
                 .conWarnAreaChanged(followupData)))
-                && !polygonLocked) {
+                && !polygonLocked && !trackLocked) {
             redrawFromWarned();
         }
 
@@ -1518,8 +1521,8 @@ public class WarngenDialog extends CaveSWTDialog implements
             }
             warngenLayer.getStormTrackState().setInitiallyMotionless(
                     (warngenLayer.getConfiguration().isTrackEnabled() == false)
-                            || (warngenLayer.getConfiguration()
-                                    .getPathcastConfig() == null));
+                    || (warngenLayer.getConfiguration()
+                            .getPathcastConfig() == null));
             if (warngenLayer.getStormTrackState().isInitiallyMotionless()) {
                 warngenLayer.getStormTrackState().speed = 0;
                 warngenLayer.getStormTrackState().angle = 0;
@@ -1570,6 +1573,7 @@ public class WarngenDialog extends CaveSWTDialog implements
      * @param b
      */
     private void setTrackLocked(boolean b) {
+        trackLocked = b;
         fromTrack.setEnabled(!b);
         warngenLayer.getStormTrackState().editable = !b;
     }
@@ -1624,7 +1628,7 @@ public class WarngenDialog extends CaveSWTDialog implements
                         if ((WarningAction
                                 .valueOf(warngenLayer.state.followupData
                                         .getAct()) == WarningAction.CON)
-                                && (totalSegments > 1)) {
+                                        && (totalSegments > 1)) {
                             sameProductMessage(warngenLayer.state.followupData
                                     .getEquvialentString());
                         }
@@ -1633,21 +1637,22 @@ public class WarngenDialog extends CaveSWTDialog implements
                 }
             } else {
                 if (warngenLayer.state.followupData != null) {
-                    // Sets the updatelist with the last selected vtec option
-                    for (int i = 0; i < updateListCbo.getItemCount(); i++) {
-                        String item = updateListCbo.getItem(i);
-                        if (item.equals(warngenLayer.state.followupData
-                                .getDisplayString())) {
-                            updateListCbo.select(i);
-                            updateListCbo.setText(item);
-                            data = warngenLayer.state.followupData;
-                            break;
-                        }
-                    }
-                } else {
+                    // recreate updates before setting the updatelist to the
+                    // last selected vtec option
                     recreateUpdates();
                     recreateDurations(durationList);
-                    return;
+                    for (int i = 0; i < updateListCbo.getItemCount(); i++) {
+                        FollowupData fd = (FollowupData) updateListCbo
+                                .getData(updateListCbo.getItem(i));
+                        if ( fd != null ) {
+                            if (fd.equals(warngenLayer.state.followupData)) {
+                                updateListCbo.select(i);
+                                updateListCbo.setText(updateListCbo.getItem(i));
+                                data = warngenLayer.state.followupData;
+                                return;
+                            }
+                        }
+                    }
                 }
             }
             if (currMode == Mode.DRAG_ME) {
@@ -2116,7 +2121,7 @@ public class WarngenDialog extends CaveSWTDialog implements
         setPolygonLocked(false);
         AbstractWarningRecord newWarn = CurrentWarnings.getInstance(
                 warngenLayer.getLocalizedSite()).getNewestByTracking(
-                data.getEtn(), data.getPhen() + "." + data.getSig());
+                        data.getEtn(), data.getPhen() + "." + data.getSig());
 
         updatePolygon(newWarn);
 
@@ -2147,7 +2152,7 @@ public class WarngenDialog extends CaveSWTDialog implements
 
         AbstractWarningRecord newWarn = CurrentWarnings.getInstance(
                 warngenLayer.getLocalizedSite()).getNewestByTracking(
-                data.getEtn(), data.getPhen() + "." + data.getSig());
+                        data.getEtn(), data.getPhen() + "." + data.getSig());
 
         updatePolygon(newWarn);
 
@@ -2459,7 +2464,7 @@ public class WarngenDialog extends CaveSWTDialog implements
     public void realizeEditableState() {
         boolean layerEditable = warngenLayer.isEditable();
         // TODO: Note there is no 'is track editing allowed' state yet.
-        warngenLayer.getStormTrackState().editable = layerEditable && trackEditable;
+        warngenLayer.getStormTrackState().editable = layerEditable && trackEditable && !trackLocked;
         warngenLayer.setBoxEditable(layerEditable && boxEditable && !polygonLocked);
         warngenLayer.issueRefresh();
     }

edexOsgi/build.edex/esb/data/utility/common_static/base/python/RollbackMasterInterface.py

@@ -33,17 +33,12 @@
 #    Date            Ticket#       Engineer       Description
 #    ------------    ----------    -----------    --------------------------
 #    01/17/13                      dgilling       Initial Creation.
+#    10/09/13         16614   njensen      Fixed reloadModules()
 #    
 # 
 #
 
-import os
-
 import MasterInterface
-import RollBackImporter
-
-rollbackImporter = RollBackImporter.RollBackImporter()
-
 
 class RollbackMasterInterface(MasterInterface.MasterInterface):
     
@@ -75,8 +70,6 @@ class RollbackMasterInterface(MasterInterface.MasterInterface):
     
     def reloadModules(self):
         for script in self.scripts:
-            super(RollbackMasterInterface, self).removeModule(script)       
-        rollbackImporter.rollback()
-        self.importModules()
+            super(RollbackMasterInterface, self).reloadModule(script)        
         
         

edexOsgi/build.edex/esb/data/utility/edex_static/base/config/gfe/serverConfig.py

@@ -19,6 +19,15 @@
 ##
 # NOTE: THIS FILE SHOULD NOT BE USER-MODIFIED.  INSTEAD REFER TO THE
 # LOCAL CONFIG DOCUMENTATION ON HOW TO OVERRIDE SETTINGS IN THIS FILE.
+#
+# Baseline GFE server configuration 
+#
+#     SOFTWARE HISTORY
+#    
+#    Date            Ticket#       Engineer       Description
+#    ------------    ----------    -----------    --------------------------
+#    10/03/13        2424          randerso       Change localTC to use dateutil instead of pytz
+#                                                 to get correct offsets for Alaska
 
 #----------------------------------------------------------------------------
 # USEFUL DEFINES
@@ -859,9 +868,10 @@ Persistent = (0, 0, 0)     # special time constraint
 # seconds local time, e.g., 6*HOUR would indicate 6am.
 def localTC(start,repeat,duration,dst):
     timezone = SITES[GFESUITE_SITEID][3]
-    import pytz
-    tz = pytz.timezone(timezone)
-    delta = tz.utcoffset(0) - tz.dst(0);
+    import dateutil.tz, datetime
+    tz = dateutil.tz.gettz(timezone)
+    dt = datetime.datetime.utcnow()
+    delta = tz.utcoffset(dt) + tz.dst(dt)
     offset = delta.days*86400 + delta.seconds
     start = start - offset
     if dst == 1:

edexOsgi/com.raytheon.edex.plugin.gfe/utility/edex_static/base/gfe/isc/ifpnetCDF.py

@@ -66,6 +66,7 @@ from com.raytheon.uf.common.localization import LocalizationContext_Localization
 #                                                 A1, big perf improvement.
 #    05/23/13        1759          dgilling       Remove unnecessary imports.
 #    07/25/13        2233          randerso       Improved memory utilization and performance
+#    09/20/13        2405          dgilling       Clip grids before inserting into cache.
 # 
 #
 
@@ -97,8 +98,9 @@ def logDebug(*msg):
 
 
 class WECache(object):
-    def __init__(self, we, inv):
+    def __init__(self, we, inv, clipArea):
         self._we = we
+        self._clipArea = clipArea
         self._inv = OrderedDict()
         lst = list(inv)
         while len(lst):
@@ -109,7 +111,7 @@ class WECache(object):
             gridsAndHist = self._we.get(javaTRs, True)
             for idx, tr in enumerate(i):
                 pair = gridsAndHist.get(idx)
-                g = self.__encodeGridSlice(pair.getFirst())
+                g = self.__encodeGridSlice(pair.getFirst(), clipArea)
                 h = self.__encodeGridHistory(pair.getSecond())
                 self._inv[tr] = (g, h)
             lst = lst[BATCH_WRITE_COUNT:]
@@ -122,31 +124,32 @@ class WECache(object):
         try:
             return self._inv[key]
         except KeyError:
+            logEvent("Cache miss for key:", str(key))
             grid = self._we.getItem(iscUtil.toJavaTimeRange(key))
-            pyGrid = self.__encodeGridSlice(grid)
+            pyGrid = self.__encodeGridSlice(grid, self._clipArea)
             history = grid.getGridDataHistory()
             pyHist = self.__encodeGridHistory(history)
             return (pyGrid, pyHist)
     
-    def __encodeGridSlice(self, grid):
+    def __encodeGridSlice(self, grid, clipArea):
         gridType = grid.getGridInfo().getGridType().toString()
         if gridType == "SCALAR":
-            return grid.__numpy__[0]
+            return clipToExtrema(grid.__numpy__[0], clipArea)
         elif gridType == "VECTOR":
             vecGrids = grid.__numpy__
-            return (vecGrids[0], vecGrids[1])
+            return (clipToExtrema(vecGrids[0], clipArea), clipToExtrema(vecGrids[1], clipArea))
         elif gridType == "WEATHER":
             keys = grid.getKeys()
             keyList = []
             for theKey in keys:
                 keyList.append(theKey.toString())
-            return (grid.__numpy__[0], keyList)
+            return (clipToExtrema(grid.__numpy__[0], clipArea), keyList)
         elif gridType =="DISCRETE":
             keys = grid.getKey()
             keyList = []
             for theKey in keys:
                 keyList.append(theKey.toString())
-            return (grid.__numpy__[0], keyList)
+            return (clipToExtrema(grid.__numpy__[0], clipArea), keyList)
     
     def __encodeGridHistory(self, histories):
         retVal = []
@@ -524,55 +527,29 @@ def storeTopoGrid(client, file, databaseID, invMask, clipArea):
 
     logEvent("Saved Topo Grid")
 
-def historyFunc(x, y):   
-    return y[x][1]
-
 ###-------------------------------------------------------------------------###
 ###
-def storeGridDataHistory(file, we, wec, trList, timeRange):
+def storeGridDataHistory(file, we, wec, trList):
     "Stores the Grid Data history string for each grid in we."
     
-    histories = []
-    for tr in trList:
-        histories.append(historyFunc(tr, wec))
-    #histories = map(lambda x, y=wec: y[x][1], trList)
-    
     # get the maximum size of the history string 
     maxHistSize = 0
-    gridCount = 0
-    firstSlot = -1
-    lastSlot = 0
-
-    for x in xrange(len(trList)):
-        t = trList[x]
-        his = histories[x]
+    histList = []
+    for tr in trList:
+        his = wec[tr][1]
         hisString = ''
-        for i in xrange(len(his)):
-            hisString = hisString + str(his[i])
+        for i,h in enumerate(his):
+            hisString = hisString + str(h)
             if i != len(his) - 1:
                hisString = hisString + " ^"
-        if overlaps(t, timeRange):
-            if firstSlot == -1:
-                firstSlot = gridCount
-            lastSlot = gridCount
-            if len(hisString) > maxHistSize:
-                maxHistSize = len(hisString)
-        gridCount = gridCount + 1
+        histList.append(hisString)
+        maxHistSize = max(maxHistSize,len(hisString))
         
     # Make the history variable and fill it
-    histShape = (lastSlot - firstSlot + 1, maxHistSize + 1)
-    if firstSlot != -1:
-        histCube = numpy.zeros(histShape, 'c')
-        slot = 0
-        for i in xrange(firstSlot, lastSlot + 1):
-            his = histories[i]
-            hisString = ''
-            for h in range(len(his)):
-                hisString = hisString + str(his[h])
-                if h != len(his) - 1:
-                   hisString = hisString + " ^"
-            histCube[slot:] = hisString
-            slot = slot + 1
+    histShape = (len(histList), maxHistSize + 1)
+    histCube = numpy.zeros(histShape, 'c')
+    for slot, hisString in enumerate(histList):
+        histCube[slot:] = hisString
     
     # make the history variable anyway.  iscMosaic needs it.
     elemName = we.getParmid().getParmName() + "_" + we.getParmid().getParmLevel()
@@ -582,7 +559,7 @@ def storeGridDataHistory(file, we, wec, trList, timeRange):
 
     var = file.createVariable(varName, 'c', dims)
 
-    if firstSlot != -1:
+    if len(histList) > 0:
         # store the cube in the netCDF file
         var[:] = histCube
     return
@@ -756,9 +733,9 @@ def storeScalarWE(we, trList, file, timeRange, databaseID,
     
     cube = numpy.empty(shape=(gridCount, clipSize[1], clipSize[0]), dtype=numpy.float32)
 
-    wec = WECache(we, overlappingTimes)
+    wec = WECache(we, overlappingTimes, clipArea)
     for i,t in enumerate(overlappingTimes):
-        grid = clipToExtrema(wec[t][0], clipArea)
+        grid = wec[t][0]
         #adjust for time changes
         if we.getGpi().isRateParm():
             durRatio = (float(timeList[i][1]-timeList[i][0]))/float((t[1]-t[0]))
@@ -818,7 +795,7 @@ def storeScalarWE(we, trList, file, timeRange, databaseID,
     setattr(var, "fillValue", fillValue)
 
     ## Extract the GridDataHistory info and save it
-    storeGridDataHistory(file, we, wec, trList, timeRange)
+    storeGridDataHistory(file, we, wec, overlappingTimes)
     
     logEvent("Saved", gridCount, varName, " grids")
 
@@ -841,11 +818,11 @@ def storeVectorWE(we, trList, file, timeRange,
     magCube = numpy.empty(shape=(gridCount, clipSize[1], clipSize[0]),dtype=numpy.float32)
     dirCube = numpy.empty(shape=(gridCount, clipSize[1], clipSize[0]),dtype=numpy.float32)
     
-    wec = WECache(we, overlappingTimes)
+    wec = WECache(we, overlappingTimes, clipArea)
     for i,t in enumerate(overlappingTimes):
         vecData = wec[t][0]
-        mag = clipToExtrema(vecData[0], clipArea)
-        dir = clipToExtrema(vecData[1], clipArea)
+        mag = vecData[0]
+        dir = vecData[1]
         if we.getGpi().isRateParm():
             durRatio = (float(timeList[i][1]-timeList[i][0]))/float((t[1]-t[0]))
             mag *= durRatio
@@ -947,7 +924,7 @@ def storeVectorWE(we, trList, file, timeRange,
     setattr(dirVar, "fillValue", dfillValue)
 
     ## Extract the GridDataHistory info and save it
-    storeGridDataHistory(file, we, wec, trList, timeRange)
+    storeGridDataHistory(file, we, wec, overlappingTimes)
     
     logEvent("Saved", gridCount, varName, "grids")
 
@@ -1001,11 +978,10 @@ def storeWeatherWE(we, trList, file, timeRange, databaseID, invMask, clipArea):
     byteCube = numpy.empty(shape=(gridCount, clipSize[1], clipSize[0]), dtype=numpy.int8)
 
     keyList = []
-    wec = WECache(we, overlappingTimes)
+    wec = WECache(we, overlappingTimes, clipArea)
     for i,t in enumerate(overlappingTimes):
         wx = wec[t][0]
-        grid = clipToExtrema(wx[0], clipArea)
-        byteCube[i] = grid
+        byteCube[i] = wx[0]
         keyList.append(wx[1])
 
     # make the variable name
@@ -1070,7 +1046,7 @@ def storeWeatherWE(we, trList, file, timeRange, databaseID, invMask, clipArea):
     setattr(var, "fillValue", fillValue)
 
     ## Extract the GridDataHistory info and save it
-    storeGridDataHistory(file, we, wec, trList, timeRange)
+    storeGridDataHistory(file, we, wec, overlappingTimes)
 
     logEvent("Saved", gridCount, varName, "grids")
 
@@ -1092,11 +1068,10 @@ def storeDiscreteWE(we, trList, file, timeRange, databaseID, invMask, clipArea):
     byteCube = numpy.empty(shape=(gridCount, clipSize[1], clipSize[0]), dtype=numpy.int8)
     
     keyList = []
-    wec = WECache(we, overlappingTimes)
+    wec = WECache(we, overlappingTimes, clipArea)
     for i,t in enumerate(overlappingTimes):
         dis = wec[t][0]
-        grid = clipToExtrema(dis[0], clipArea)
-        byteCube[i] = grid
+        byteCube[i] = dis[0]
         keyList.append(dis[1])
     
 
@@ -1160,7 +1135,7 @@ def storeDiscreteWE(we, trList, file, timeRange, databaseID, invMask, clipArea):
     setattr(var, "fillValue", fillValue)
 
     ## Extract the GridDataHistory info and save it
-    storeGridDataHistory(file, we, wec, trList, timeRange)
+    storeGridDataHistory(file, we, wec, overlappingTimes)
 
     logEvent("Saved", gridCount, varName, "grids")
 
@@ -1335,7 +1310,8 @@ def main(outputFilename, parmList, databaseID, startTime,
     try:
         timeRange = makeTimeRange(argDict['startTime'], argDict['endTime'])
     except:
-        sys.exit(1)
+        logException("Unable to create TimeRange from arguments: startTime= " + str(argDict['startTime']) + ", endTime= " + argDict['endTime'])
+        return
     
     # See if the databaseID is valid.  An exception will be tossed
     db = IFPDB(argDict['databaseID'])

edexOsgi/com.raytheon.edex.plugin.grib/utility/edex_static/base/grib/models/gribModels_NCEP-7.xml

@@ -2879,21 +2879,11 @@
 		<name>HPCGuide</name>
 		<center>7</center>
 		<subcenter>5</subcenter>
-		<grid>197</grid>
 		<process>
 			<id>183</id>
 		</process>
 	</model>
 
-	<model>
-		<name>HPCGuide-2.5km</name>
-		<center>7</center>
-		<subcenter>5</subcenter>
-		<process>
-			<id>183</id>
-		</process>
-	</model>
-	
 	<model>
 		<name>HPCGuide-AK</name>
 		<center>7</center>

edexOsgi/com.raytheon.messaging.mhs/src/com/raytheon/messaging/mhs/MhsMessage.java

@@ -81,15 +81,6 @@ public class MhsMessage {
      */
     static public final String EnvMhsTrace = "MHS_SHOW_TRACE";
 
-    /**
-     * Environment variable to determine the MHS interface to use. If undefined,
-     * it is the same as defining it to "NO" or "FALSE". If set to "YES" or
-     * "TRUE", then the JNI interface to the MHS DWB functions is used to submit
-     * messages. Any other value results in message submission occurring via the
-     * command line utility msg_send.
-     */
-    static public final String EnvMhsUseNative = "MHS_USE_NATIVE_INTERFACE";
-
     /**
      * Minimum message code value
      */
@@ -194,7 +185,6 @@ public class MhsMessage {
      * Valid time parameter formatted as a string (mm/dd/yyyy:HHMM). This value
      * is derived from {@link #validTime} during message submission.
      */
-    @SuppressWarnings("unused")
     private String validTimeString;
 
     /**
@@ -207,7 +197,6 @@ public class MhsMessage {
      * Timeout time parameter formatted as a string (mm/dd/yyyy:HHMM). This
      * value is derived from {@link #timeoutTime} during message submission.
      */
-    @SuppressWarnings("unused")
     private String timeoutTimeString;
 
     /**
@@ -259,11 +248,6 @@ public class MhsMessage {
      */
     private String resultText;
 
-    /**
-          * 
-          */
-    private boolean useNativeInterface;
-
     /**
      * Sole constructor. Provides reasonable default values for a message
      * object's fields as follows:
@@ -286,14 +270,10 @@ public class MhsMessage {
      */
     public MhsMessage(int code) {
         String traceString = System.getenv(EnvMhsTrace);
-        String interfaceString = System.getenv(EnvMhsUseNative);
 
         showTrace = (traceString != null)
-                && ((traceString.equalsIgnoreCase("yes") || traceString
-                        .equalsIgnoreCase("true")));
-        useNativeInterface = (interfaceString != null)
-                && ((interfaceString.equalsIgnoreCase("yes")) || interfaceString
-                        .equalsIgnoreCase("true"));
+                && ((traceString.equalsIgnoreCase("yes") 
+                || traceString.equalsIgnoreCase("true")));
 
         actionCode = code;
         setRetryCount(0);
@@ -313,21 +293,6 @@ public class MhsMessage {
         submitted = false;
     }
 
-    /**
-     * Submits a message to the message request server daemon. This is JNI code
-     * to translate a Java message object to a C MHS message object.
-     * 
-     * @return 0 if successful; a positive integer if a MHS error is detected;
-     *         -1 if an error occurs in a JNI call, which will usually result in
-     *         a Java exception when control is returned toe the JVM.
-     * @see MhsMessage
-     */
-    private native String submitMessage() throws MhsSubmitException;
-
-    static {
-        System.loadLibrary("coDDM_msg_send");
-    }
-
     /**
      * Gets the action code for this message object.
      * 
@@ -839,30 +804,6 @@ public class MhsMessage {
         return retryCount;
     }
 
-    /**
-     * Call to force the MHS interface to be used for this message. The default
-     * value is determined by the environment variable MHS_USE_NATIVE_INTERFACE.
-     * Set to true to use the native C DWB functions. Set to false to use the
-     * command line utility msg_send.
-     * 
-     * @param useNativeInterface
-     *            the useNativeInterface to set
-     */
-    public void setUseNativeInterface(boolean useNativeInterface) {
-        this.useNativeInterface = useNativeInterface;
-    }
-
-    /**
-     * Returns the MHS interface that will be used to submit this message. A
-     * true value indicates that the native C DWB functions will be used. False
-     * indicates that the command line utility msg_send will be used.
-     * 
-     * @return the useNativeInterface
-     */
-    public boolean isUseNativeInterface() {
-        return useNativeInterface;
-    }
-
     /**
      * Retrieves the message Id of this message.
      * 
@@ -1153,147 +1094,136 @@ public class MhsMessage {
         String timeStamp = timeStampFormat.format(System.currentTimeMillis());
         System.out.println(timeStamp + ": Message submitted");
 
-        if (useNativeInterface) { // Submit the message using the MHS and DWB
-                                  // native libraries.
-            try {
-                messageId = submitMessage();
-            } catch (MhsSubmitException e) {
-                resultText = e.toString();
-                throw new MhsSubmitException(resultText);
-            }
-        } else { // Submit the message by constructing a command line and
-                 // execing a new msg_send process
-            LinkedList<String> command = new LinkedList<String>();
+        LinkedList<String> command = new LinkedList<String>();
 
-            command.add("msg_send");
-            command.add("-c" + actionCode);
-            String addrStr = "";
-            String ackAddrStr = "";
-            String encList = "";
+        command.add("msg_send");
+        command.add("-c" + actionCode);
+        String addrStr = "";
+        String ackAddrStr = "";
+        String encList = "";
 
-            for (int i = 0; i < addressees.getCount(); i++) {
-                Addressee addr = addressees.get(i);
-                if (addr.isAckRequired()) {
-                    if (ackAddrStr.isEmpty()) {
-                        ackAddrStr = addr.getAddress();
-                    } else {
-                        ackAddrStr += "," + addr.getAddress();
-                    }
+        for (int i = 0; i < addressees.getCount(); i++) {
+            Addressee addr = addressees.get(i);
+            if (addr.isAckRequired()) {
+                if (ackAddrStr.isEmpty()) {
+                    ackAddrStr = addr.getAddress();
                 } else {
-                    if (addrStr.isEmpty()) {
-                        addrStr = addr.getAddress();
-                    } else {
-                        addrStr += "," + addr.getAddress();
-                    }
+                    ackAddrStr += "," + addr.getAddress();
                 }
-            }
-
-            if (!addrStr.isEmpty()) {
-                command.add("-a" + addrStr);
-            }
-
-            if (!ackAddrStr.isEmpty()) {
-                command.add("-A" + ackAddrStr);
-            }
-
-            if (retryCount != 0) {
-                command.add("-R" + retryCount);
-            }
-
-            for (int i = 0; i < enclosures.getCount(); i++) {
-                Enclosure enc = enclosures.get(i);
-                if (encList.isEmpty()) {
-                    encList = enc.getEnclosureName();
+            } else {
+                if (addrStr.isEmpty()) {
+                    addrStr = addr.getAddress();
                 } else {
-                    encList += "," + enc.getEnclosureName();
-                }
-            }
-
-            if (!encList.isEmpty()) {
-                command.add("-e" + encList);
-            }
-
-            if (!timeoutTimeString.isEmpty()) {
-                command.add("-T" + timeoutTimeString);
-            }
-
-            if (!validTimeString.isEmpty()) {
-                command.add("-v" + validTimeString);
-            }
-
-            if (!bodyFile.isEmpty()) {
-                command.add("-b" + bodyFile);
-            }
-
-            if (!productId.isEmpty()) {
-                command.add("-i" + productId);
-            }
-
-            if (!subject.isEmpty()) {
-                command.add("-s" + subject);
-            }
-
-            if (priority != MhsMessagePriority.Default) {
-                command.add("-p" + priority.value());
-            }
-
-            if (type != MhsMessageType.Routine) {
-                command.add("-t" + type.text());
-            }
-
-            if (verifyAddressees) {
-                command.add("-C");
-            }
-
-            if (showTrace) {
-                System.out.print("Executing command: ");
-                for (int i = 0; i < command.size(); i++) {
-                    System.out.print(command.get(i) + " ");
-                }
-                System.out.println();
-            }
-
-            Process proc = null;
-            try {
-                ProcessBuilder procDesc = new ProcessBuilder(command);
-                procDesc.redirectErrorStream(true);
-
-                proc = procDesc.start();
-                InputStream stdout = proc.getInputStream();
-                InputStreamReader isr = new InputStreamReader(stdout);
-                BufferedReader br = new BufferedReader(isr);
-                String outp;
-
-                while ((outp = br.readLine()) != null) {
-                    if (outp.length() > 0) {
-                        // System.out.println(outp);
-                        messageId = outp;
-                    }
-                }
-                // System.out.println(line);
-                int exitVal = proc.waitFor();
-                if (exitVal != 0) {
-                    // System.out.println("Abnormal exit code " + exitVal);
-                    // resultText = messageId;
-                    throw new MhsSubmitException(messageId);
-                }
-
-                if (showTrace) {
-                    System.out
-                            .println("Message successfully submitted.  Message ID: "
-                                    + messageId);
-                }
-            } catch (Throwable t) {
-                resultText = t.getMessage();
-                // System.out.println("Exception thrown: " + resultText);
-                throw new MhsSubmitException(resultText);
-            } finally {
-                // DR #10955
-                if (proc != null) {
-                    proc.destroy();
+                    addrStr += "," + addr.getAddress();
                 }
             }
         }
+
+        if (!addrStr.isEmpty()) {
+            command.add("-a" + addrStr);
+        }
+
+        if (!ackAddrStr.isEmpty()) {
+            command.add("-A" + ackAddrStr);
+        }
+
+        if (retryCount != 0) {
+            command.add("-R" + retryCount);
+        }
+
+        for (int i = 0; i < enclosures.getCount(); i++) {
+            Enclosure enc = enclosures.get(i);
+            if (encList.isEmpty()) {
+                encList = enc.getEnclosureName();
+            } else {
+                encList += "," + enc.getEnclosureName();
+            }
+        }
+
+        if (!encList.isEmpty()) {
+            command.add("-e" + encList);
+        }
+
+        if (!timeoutTimeString.isEmpty()) {
+            command.add("-T" + timeoutTimeString);
+        }
+
+        if (!validTimeString.isEmpty()) {
+            command.add("-v" + validTimeString);
+        }
+
+        if (!bodyFile.isEmpty()) {
+            command.add("-b" + bodyFile);
+        }
+
+        if (!productId.isEmpty()) {
+            command.add("-i" + productId);
+        }
+
+        if (!subject.isEmpty()) {
+            command.add("-s" + subject);
+        }
+
+        if (priority != MhsMessagePriority.Default) {
+            command.add("-p" + priority.value());
+        }
+
+        if (type != MhsMessageType.Routine) {
+            command.add("-t" + type.text());
+        }
+
+        if (verifyAddressees) {
+            command.add("-C");
+        }
+
+        if (showTrace) {
+            System.out.print("Executing command: ");
+            for (int i = 0; i < command.size(); i++) {
+                System.out.print(command.get(i) + " ");
+            }
+            System.out.println();
+        }
+
+        Process proc = null;
+        try {
+            ProcessBuilder procDesc = new ProcessBuilder(command);
+            procDesc.redirectErrorStream(true);
+
+            proc = procDesc.start();
+            InputStream stdout = proc.getInputStream();
+            InputStreamReader isr = new InputStreamReader(stdout);
+            BufferedReader br = new BufferedReader(isr);
+            String outp;
+
+            while ((outp = br.readLine()) != null) {
+                if (outp.length() > 0) {
+                    // System.out.println(outp);
+                    messageId = outp;
+                }
+            }
+            // System.out.println(line);
+            int exitVal = proc.waitFor();
+            if (exitVal != 0) {
+                // System.out.println("Abnormal exit code " + exitVal);
+                // resultText = messageId;
+                throw new MhsSubmitException(messageId);
+            }
+
+            if (showTrace) {
+                System.out.println("Message successfully submitted.  Message ID: "
+                                    + messageId);
+            }
+        } catch (Throwable t) {
+            resultText = t.getMessage();
+            // System.out.println("Exception thrown: " + resultText);
+            throw new MhsSubmitException(resultText);
+        } finally {
+            // DR #10955
+            if (proc != null) {
+                proc.destroy();
+            }
+        }
+
         return messageId;
     }
 }

edexOsgi/com.raytheon.uf.common.dataplugin.warning/src/com/raytheon/uf/common/dataplugin/warning/util/GeometryUtil.java

@@ -26,6 +26,7 @@ import com.vividsolutions.jts.geom.prep.PreparedGeometry;
  * ------------ ---------- ----------- --------------------------
  * Nov 15, 2010            mschenke     Initial creation
  * Apr 28, 2013     1955   jsanchez     Added an ignoreUserData flag to intersection method.
+ * Oct 01, 2013 DR 16632   Qinglu Lin   Catch exceptions thrown by intersection().
  * 
  * </pre>
  * 
@@ -120,8 +121,13 @@ public class GeometryUtil {
 
                 if (g1Name == null || g2Name == null || g2Name.equals(g1Name)
                         || ignoreUserData) {
-                    Geometry section = g1.intersection(g2);
-                    if (section.isEmpty() == false) {
+                	Geometry section = null;
+                    try {
+                        section = g1.intersection(g2);
+                    } catch (Exception e) {
+                        ; //continue;
+                    }
+                    if (section != null && section.isEmpty() == false) {
                         if (g2.getUserData() != null) {
                             if (section instanceof GeometryCollection) {
                                 for (int n = 0; n < section.getNumGeometries(); ++n) {

edexOsgi/com.raytheon.uf.common.dataquery/src/com/raytheon/uf/common/dataquery/db/QueryParam.java

@@ -24,20 +24,21 @@ import java.util.HashMap;
 import java.util.Iterator;
 
 /**
- * Encapsulates the query parameters for a database query
+ * Encapsulates the query parameters for a database query.
  * 
  * <pre>
  * SOFTWARE HISTORY
  * Date         Ticket#    Engineer    Description
  * ------------ ---------- ----------- --------------------------
- * 05/29/08     #875       bphillip    Initial Creation
+ * May 29, 2008 875        bphillip    Initial Creation
+ * Oct 07, 2013 2392       rjpeter     Updated to auto handle passing a null value to an equal operand.
  * </pre>
  * 
  * @author bphillip
  * @version 1.0
  */
 public class QueryParam {
-    
+
     /** Enumeration containing the logic operands */
     public enum QueryOperand {
         EQUALS, NOTEQUALS, LESSTHAN, LESSTHANEQUALS, GREATERTHAN, GREATERTHANEQUALS, IN, LIKE, ILIKE, BETWEEN, ISNULL, ISNOTNULL
@@ -71,11 +72,12 @@ public class QueryParam {
 
     /** The query operand */
     private String operand = "=";
-    
+
     private String className;
 
     /**
-     * Creates a new QueryParam. Operand defaults to equals
+     * Creates a new QueryParam. Operand defaults to equals, unless value is
+     * null, then operand is isNull.
      * 
      * @param field
      *            The field
@@ -83,12 +85,12 @@ public class QueryParam {
      *            The value
      */
     public QueryParam(String field, Object value) {
-        this.field = field;
-        this.value = value;
+        this(field, value, "=", null);
     }
 
     /**
-     * Creates a new QueryParam.
+     * Creates a new QueryParam. If value is null and operand is =, operand is
+     * updated to isNull.
      * 
      * @param field
      *            The field
@@ -98,31 +100,66 @@ public class QueryParam {
      *            The operand
      */
     public QueryParam(String field, Object value, String operand) {
-        this.field = field;
-        this.value = value;
-        this.operand = operand;
+        this(field, value, operand, null);
     }
-    
-    public QueryParam(String field, Object value, String operand,String className) {
+
+    /**
+     * Creates a new QueryParam. If value is null and operand is =, operand is
+     * updated to isNull.
+     * 
+     * @param field
+     * @param value
+     * @param operand
+     * @param className
+     */
+    public QueryParam(String field, Object value, String operand,
+            String className) {
         this.field = field;
         this.value = value;
-        this.operand = operand;
+
+        if (value == null && "=".equals(operand)) {
+            this.operand = "isNull";
+        } else {
+            this.operand = operand;
+        }
+
         this.className = className;
     }
-    
+
+    /**
+     * Creates a new QueryParam. If value is null and operand is =, operand is
+     * updated to isNull.
+     * 
+     * @param field
+     * @param value
+     * @param operand
+     */
     public QueryParam(String field, Object value, QueryOperand operand) {
-        this.field = field;
-        this.value = value;
-        this.operand = QueryParam.reverseTranslateOperand(operand);
+        this(field, value, operand, null);
     }
-    
-    public QueryParam(String field, Object value, QueryOperand operand,String className) {
+
+    /**
+     * Creates a new QueryParam. If value is null and operand is =, operand is
+     * updated to isNull.
+     * 
+     * @param field
+     * @param value
+     * @param operand
+     * @param className
+     */
+    public QueryParam(String field, Object value, QueryOperand operand,
+            String className) {
         this.field = field;
         this.value = value;
-        this.operand = QueryParam.reverseTranslateOperand(operand);
+
+        if (value == null && QueryOperand.EQUALS.equals(operand)) {
+            this.operand = "isNull";
+        } else {
+            this.operand = QueryParam.reverseTranslateOperand(operand);
+        }
+
         this.className = className;
     }
-    
 
     /**
      * Translates the string representation of an operand to the enumeration
@@ -147,6 +184,7 @@ public class QueryParam {
         return "=";
     }
 
+    @Override
     public String toString() {
         return new StringBuffer().append(field).append(" ")
                 .append(this.operand).append(" ").append(this.value).toString();

edexOsgi/com.raytheon.uf.edex.database/src/com/raytheon/uf/edex/database/plugin/PluginDao.java

@@ -112,7 +112,7 @@ import com.raytheon.uf.edex.database.query.DatabaseQuery;
  * May 07, 2013 1869       bsteffen    Remove dataURI column from
  *                                     PluginDataObject.
  * May 16, 2013 1869       bsteffen    Rewrite dataURI property mappings.
- * 
+ * Oct 07, 2013 2392       rjpeter     Updated to pass null productKeys as actual null instead of string null.
  * </pre>
  * 
  * @author bphillip
@@ -1234,7 +1234,11 @@ public abstract class PluginDao extends CoreDao {
                 int index = 0;
                 for (Object obj : results) {
                     distinctValues[index] = new String[1];
-                    distinctValues[index++][0] = String.valueOf(obj);
+                    if (obj != null) {
+                        distinctValues[index++][0] = String.valueOf(obj);
+                    } else {
+                        distinctValues[index++][0] = null;
+                    }
                 }
             } else {
                 List<Object[]> results = (List<Object[]>) this
@@ -1247,7 +1251,12 @@ public abstract class PluginDao extends CoreDao {
                     int cIndex = 0;
 
                     for (Object obj : result) {
-                        distinctValues[rIndex][cIndex++] = String.valueOf(obj);
+                        if (obj != null) {
+                            distinctValues[rIndex][cIndex++] = String
+                                    .valueOf(obj);
+                        } else {
+                            distinctValues[rIndex][cIndex++] = null;
+                        }
                     }
 
                     rIndex++;