537 lines
19 KiB
HTML
537 lines
19 KiB
HTML
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<!DOCTYPE html PUBLIC "-//w3c//dtd html 4.0 transitional//en">
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<html>
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<head>
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<meta http-equiv="Content-Type"
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content="text/html; charset=iso-8859-1">
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<meta http-equiv="CONTENT-TYPE"
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content="text/html; charset=iso-8859-1">
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<meta name="GENERATOR"
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content="Mozilla/4.79 [en] (X11; U; Linux 2.4.9-34smp i686) [Netscape]">
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<meta name="CREATED" content="20010713;13550500">
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<meta name="CHANGEDBY" content="Tom Lefebvre">
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<meta name="CHANGED" content="20010713;15202800">
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<title>ifpnetCDF Formatter User's Guide</title>
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</head>
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<body bgcolor="#ffffff">
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<h1>
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ifpnetCDF Formatter User's Guide</h1>
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<div style="margin-bottom: 0in;">January 6, 2012<br>
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</div>
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<p><br>
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</p>
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<h2><a name="TableofContents"></a>Table of Contents</h2>
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<b><a href="#Overview">Overview</a></b>
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<h4><a href="#RunningtheifpAGProgram">Running the ifpnetCDF Program</a></h4>
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<h4>
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<a href="#OrganizationoftheGriddedData">Organization of the Gridded Data</a></h4>
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<b><a href="#AdditionalDataFields">Additional Data Fields</a></b>
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<p><b><a href="#Converting">Converting to real values from the "-k
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krunch"
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option</a></b>
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<br>
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</p>
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<p><a style="font-weight: bold;" href="#configIntervalFile">Configuration
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Interval File</a><br>
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</p>
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<hr width="100%">
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<h2><a name="Overview"></a>Overview</h2>
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<div style="margin-bottom: 0in;">The ifpnetCDF program reads gridded
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data
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from EDEX that you specify and writes the data to a netCDF
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file.
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In addtion to the forecast grids, a <a href="#Topography">topography
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grid</a>,
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<a href="#Latitude">latitude
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grid, or longitude grid</a> can be written to the file using the -g
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option.
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Virtually all of the data describing each weather element is written to
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the file as well, including the grid size, projection and domain
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information,
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units, and valid times for each grid. The following sections describe
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how
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to use this program and document the structure of the resulting netCDF
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file. A special switch is available (-k) to "squish" down the
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formats
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of the data file to as compact as possible.<br>
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<br>
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A special configuration file may be used to "sample" the grids and not
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take each grid in the inventory. This has the benefit of
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dramatically cutting down on the bandwidth required to transmit the
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netCDF file when only a portion of the inventory is required.<br>
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</div>
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<p><br>
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</p>
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<hr>
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<h2><a name="RunningtheifpAGProgram"></a>Running the ifpnetCDF Program</h2>
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<div style="margin-bottom: 0in;">The program is capable of both storing
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and retrieving grids from EDEX.</div>
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<div style="margin-bottom: 0in;">The command line syntax is:</div>
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<div style="margin-bottom: 0in;"><tt>ifpnetCDF -o outputFile -h hostname
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-r rpcPortNumber -d databaseID [-p parmID] [-s startTime] [-e endTime]
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[-m editAreaName] [-u user] [-g] [-t] [-C configurationIntervalName]<br>
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</tt></div>
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<div style="margin-bottom: 0in;">A sample command line is:</div>
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<div style="margin-bottom: 0in;"><tt>ifpnetCDF -o myGridFile -h dx3-oax
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-r 9581 -d TEST_GRID__Fcst_00000000_0000 -p T -s 19980604_1200 -e
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19980605_0000
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-m BOU -g -c -t -C cdfSample<br>
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</tt></div>
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<br>
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<table border="1" cellpadding="2" cellspacing="2" width="100%">
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<tbody>
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<tr>
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<td><b>Option Syntax</b></td>
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<td><b>Optional or Mandatory</b></td>
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<td><b>Description</b></td>
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</tr>
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<tr>
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<td>-o filename</td>
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<td>
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<center>Optional</center>
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</td>
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<td>Specifies the name of the output file. If no output file is
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specified
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the data will be written to the file ifpnetCDFFile.cdf</td>
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</tr>
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<tr>
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<td>-h hostname</td>
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<td>
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<center>Mandatory (See Note)</center>
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</td>
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<td>Specifies the EDEX host from which the data will be
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extracted.</td>
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</tr>
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<tr>
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<td>-r port</td>
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<td>
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<center>Mandatory (See Note)</center>
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</td>
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<td>Specifies the EDEX host from which the data will be
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extracted.</td>
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</tr>
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<tr>
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<td>-u user</td>
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<td>
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<center>Optional</center>
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</td>
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<td>Specifies the user for connection to the server. Defaults to
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SITE.
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Important only when using edit area masks and the mask hasn't been
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defined
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in BASE or SITE.</td>
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</tr>
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<tr>
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<td>-d databaseID</td>
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<td>
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<center>Mandatory</center>
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</td>
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<td>Source database identifier from which to get the data.
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There
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may be only one databaseID specified. The format of the database
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identifier is: site_GRID_optType_modelName_modelRunTime. For example:
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DEN_GRID__eta_19980604_1200.
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(Note double underscore after GRID for databases that don't have the
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optional
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type)</td>
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</tr>
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<tr>
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<td>-p weatherElementName</td>
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<td>
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<center>Optional</center>
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</td>
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<td>If no -p switches are present, then all weather elements in
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the specified
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databases will be processed. There may be several -p switches
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present
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if desired. For example: -p T -p Td -p Wind. The weather element
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name refers to the SFC level, unless the weather element name contains
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an underscore. To specify a level other than SFC, use the format
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weatherElementName_level, such as T_3K.</td>
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</tr>
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<tr>
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<td>-s startTime</td>
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<td>
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<center>Optional</center>
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</td>
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<td>Specifies the start time for the range of grids to extract.
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If no time
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is specified, then assume "from the beginning of time". Format is
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yyyyMMDD_HHMM
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or 20010604_1200.</td>
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</tr>
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<tr>
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<td>-e endTime</td>
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<td>
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<center>Optional</center>
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</td>
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<td>Specifies the ending time for the range of grids to extract.
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If no
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time is specified, then assume "to the end of time". Format is
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yyyyMMDD_HHMM
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or 20010604_1200.</td>
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</tr>
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<tr>
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<td> -m mask</td>
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<td>
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<center>Optional</center>
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</td>
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<td>Specifies an edit area outside of which the grids are clipped
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with
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a fill value. If the edit area is not specified
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or is not found in EDEX, the entire grid will be written to
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the file unclipped.</td>
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</tr>
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<tr>
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<td> -g</td>
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<td>
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<center>Optional</center>
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</td>
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<td>When specified, a grid of topography, latitude, and longitude
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are also
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written to the netCDF file.</td>
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</tr>
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<tr>
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<td>-c</td>
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<td>
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<center>Optional</center>
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</td>
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<td>When specified, the output will be compressed. The
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compression factor
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to gzip defaults to 6; this can be changed through the -f switch.</td>
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</tr>
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<tr>
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<td>-f factor</td>
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<td>
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<center>Optional</center>
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</td>
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<td>When specified with the -c switch, this defines the gzip
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factor to
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be applied to the compression. Defaults to 6. Can range from 1 to 9
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with
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9 being the maximum, but slowest, compression.</td>
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</tr>
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<tr>
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<td>-t</td>
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<td>
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<center>Optional</center>
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</td>
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<td>When specified, data values will be "trimmed" or rounded to
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the precision
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of the data, as defined by EDEX.</td>
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</tr>
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<tr>
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<td>-k</td>
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<td>
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<center>Optional</center>
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</td>
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<td>The -t switch must also be given if the -k functionality is
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desired.
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The -k switch reformats the data values into smaller units, as as
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converting
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a 32-bit float into a 8-bit byte, in order to save space. When
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the
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-k switch is given and the data has been reformatted, two new
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attributes
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provided (dataMultipler and dataOffset) which are used to convert the
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data
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back into real numbers.</td>
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</tr>
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<tr>
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<td style="vertical-align: top;">-C configIntervalName<br>
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</td>
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<td style="vertical-align: top; text-align: center;">Optional<br>
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</td>
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<td style="vertical-align: top;">Specifies a <a
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href="#configIntervalFile">configuration interval file</a> which
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controls the interval/spacing of the grids. The name identifies a
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file within the EDEX textUtilities directory and must be a Python
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file in the correct format.<br>
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</td>
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</tr>
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</tbody>
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</table>
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<font color="#3366ff"><b>Note:</b> The -h and -r switches are predefined if
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you
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are running ifpnetCDF in the GFESuite installed environment. The
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values specified in the installation are picked up automatically. You
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only
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need to specify them if you want to connect to a different EDEX.</font><font
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color="#3366ff"> </font><font color="#3366ff"> If
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environment variables ${CDSHOST} or
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${CDSPORT} are defined, then the default server and port will be
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determined from the environment variables, unless overridden with the
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user specified -h and -r switches.</font>
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<p><br>
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</p>
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<h2>
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<hr width="100%"></h2>
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<h2>
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<a name="OrganizationoftheGriddedData"></a>Organization of the Gridded
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Data in the netCDF file</h2>
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<div style="margin-bottom: 0in;">The organization of the data is
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described
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in the <a href="netCDFFormat.html#OrganizationoftheGriddedData">netCDF
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format documentation</a>.</div>
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<div style="margin-bottom: 0in;">
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<hr width="100%">
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<h2><a name="AdditionalDataFields"></a>Additional Data Fields</h2>
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</div>
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<h3>
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<a name="Topography"></a>Topography</h3>
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<div style="margin-bottom: 0in;">The ifpnetCDF program will optionally
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store
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a topography grid along with the weather elements that you specify.
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This
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grid contains similar attributes and is in units of feet above sea
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level.</div>
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<h3 style="margin-bottom: 0in;">
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<a name="Latitude"></a>Latitude, Longitude</h3>
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<div style="margin-bottom: 0in;">The ifpnetCDF program will optionally
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store
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grids of latitude and longitude at each grid point. Remember that
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longitude is expressed as a negative number, if the domain is in the
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Western
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Hemisphere. If the -k switch is given, then you will need to
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multiply
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the data values by the dataMultiplier and add the dataOffset, per the
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format
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of the netCDF attributes.</div>
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<p><br>
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</p>
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<hr width="100%">
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<h2><a name="Converting"></a>Converting to real values from the "-k
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krunch"
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option</h2>
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If the -k krunch value has been given, then the data values in the file
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need to be converted to actual values through the use of a
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formula.
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The attributes dataMultiplier and dataOffset provide the required
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information.
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If these values are not present, then you may interpret the values
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directly.
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<center>
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<p>data value = (netCDF value * dataMultiplier) + dataOffset<br>
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</p>
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<div style="text-align: left;">
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<hr style="width: 100%; height: 2px;">
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<h2><a name="configIntervalFile"></a>Configuration Interval File</h2>
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The configuration interval file is an optional capability of
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ifpnetCDF. It can be used to select certain grids to be
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placed in the ifpnetCDF output file, rather than all grids in the
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inventory. For example, you can choose to only include 3-hrly
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temperature grids out to 24 hours, then 6-hrly temperature grids out to
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72 hours, and then no temperature grids past 72 hours. You
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can control this capability on a per weather element basis. The
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definition determines a set of explicit times. If there is a grid
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that contains that explicit time, then the grid is included in the
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output.<br>
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<br>
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The configuration interval file is a python file and must reside in the
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EDEX textUtilities directory. You can create the file
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through the use of the GFE, with the GFE->Define Text Products menu,
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or by using a conventional text editor and the <a
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href="ifpServerText.html">ifpServerText utility</a>.<br>
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<br>
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Here is an example configuration interval file for the ifpnetCDF
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program, which samples the dew point (Td) with basetimes of 3z and 15z,
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which takes 6 hrly grids of Td up to 72 hours, then no Td grids after
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that point. All other weather elements use basetimes of 0z and
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12z, and take 3hr grids out to 24hr, 6 hrly grids out to 96 hr, and
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then 12 hrly grids past this point:<br>
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<br>
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The format is:<br>
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<span style="font-family: monospace; font-weight: bold;">SampleDef[weNameAndLevel]
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= ([listOfbasetimes], [list of offset/intervals])</span>, where<br>
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listOfBasetimes is <span
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style="font-weight: bold; font-family: monospace;">[basetime1,
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basetime2, basetime3, ...]</span> and <br>
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listOfOffset/Intervals is <span
|
||
|
|
style="font-family: monospace; font-weight: bold;">[(offset1,
|
||
|
|
interval1), (offset2, interval2), (offset3, interval3), ...]</span><br>
|
||
|
|
<br>
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">HR=3600</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">SampleDef = {}</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">SampleDef['default']
|
||
|
|
= (</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
[0*HR, 12*HR], #first tuple is
|
||
|
|
basetimes</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
[
|
||
|
|
#2nd tuple is list of offset from basetime, interval</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
(0*HR,
|
||
|
|
3*HR),
|
||
|
|
#start at basetime, take every 3 hours</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
(24*HR,
|
||
|
|
6*HR),
|
||
|
|
#24h+ from basetime, take every 6 hours</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
(96*HR, 12*HR),
|
||
|
|
#96h+ from basetime, take every 12 hours</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
])</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">SampleDef['Td_SFC']
|
||
|
|
= (</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
[3*HR, 15*HR], #basetimes of
|
||
|
|
3z and 15z</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
[</span><br style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
(0*HR,
|
||
|
|
6*HR),
|
||
|
|
#start at basetime, take every 6 hours</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
(72*HR, 1000*HR),
|
||
|
|
#don't take anything past 72Hr</span><br
|
||
|
|
style="font-weight: bold; font-family: monospace;">
|
||
|
|
<span style="font-weight: bold; font-family: monospace;">
|
||
|
|
])</span><br>
|
||
|
|
<br>
|
||
|
|
The file is a Python dictionary. A mandatory key is 'default',
|
||
|
|
which applies to all weather elements that are not explicitly
|
||
|
|
specified. Each entry consists of a tuple. The first tuple
|
||
|
|
is a list of basetimes, the second tuple is a list of (offset,
|
||
|
|
interval) values.<br>
|
||
|
|
<br>
|
||
|
|
<table style="width: 100%; text-align: left;" border="1" cellpadding="2"
|
||
|
|
cellspacing="2">
|
||
|
|
<tbody>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">Item<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Example<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Description<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">SampleDef = {}<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">SampleDef = {}<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Mandatory sampling definition,
|
||
|
|
defines the dictionary. The ifpnetCDF program looks for the
|
||
|
|
SampleDef variable name.<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">BaseTimes<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[0*HR, 12*HR]<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">List of times relative to
|
||
|
|
0000z. The values are specified in seconds, thus be sure to
|
||
|
|
convert the value to hours. The basetime values should not be
|
||
|
|
negative and must be less than 24*HR. The basetimes define
|
||
|
|
the "base" of the offset / interval calculations. For example, if
|
||
|
|
the basetime is set to 0000z, and the offset/interval is set to
|
||
|
|
(0*HR,3*HR), that includes grids that are aligned with 0z, 3z, 6z, 9z,
|
||
|
|
... If the basetime was set to 0200z, and the
|
||
|
|
offset/interval set to (0*HR, 3*HR), then grids would be included that
|
||
|
|
are aligned with 2z, 5z, 8z, 11z, ... There may be more
|
||
|
|
than one basetime specified.<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">Offset/Interval Times<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[(0*HR, 3*HR), (24*HR, 6*HR)]<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Defines the interval as a series
|
||
|
|
of offset and interval tuples. The offset is the starting time,
|
||
|
|
offset from the most recent basetime. The 2nd portion of the
|
||
|
|
tuple defines the interval to use for the grids.<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">'default'<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">SampleDef['default'] =
|
||
|
|
(basetimeList, offset/Interval list)) <br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Defines the interval for all
|
||
|
|
weather elements, unless specified weather elements have their own
|
||
|
|
definition.<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">'Td_SFC'<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">SampleDef['Td_SFC'] =
|
||
|
|
(basetimeList, offset/interval list)<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">Defines the interval for weather
|
||
|
|
element "Td_SFC", which is a weather element name, followed by an
|
||
|
|
underscore character, followed by the weather element level.<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
<br>
|
||
|
|
<h3>Common Offset/Interval Examples</h3>
|
||
|
|
<br>
|
||
|
|
<table style="width: 100%; text-align: left;" border="1" cellpadding="2"
|
||
|
|
cellspacing="2">
|
||
|
|
<tbody>
|
||
|
|
<tr>
|
||
|
|
<td
|
||
|
|
style="vertical-align: top; text-align: center; font-weight: bold;">Definition<br>
|
||
|
|
</td>
|
||
|
|
<td
|
||
|
|
style="vertical-align: top; text-align: center; font-weight: bold;">Basetime
|
||
|
|
Definition<br>
|
||
|
|
</td>
|
||
|
|
<td
|
||
|
|
style="vertical-align: top; text-align: center; font-weight: bold;">Offset/Interval
|
||
|
|
Definition<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">Hourly Grids up to 72 hr from
|
||
|
|
basetime, then no more grids.<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[0*HR]<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[(0*HR, 1*HR), (72*HR, 1000*HR)]<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">Hourly Grids up to 12 hr, 3 hrly
|
||
|
|
grids to 24 hr, 6 hrly grids after 24hr<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[0*HR]<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[(0*HR, 1*HR), (12*HR, 3*HR),
|
||
|
|
(24*HR, 6*HR)]</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<td style="vertical-align: top;">No grids for first 24 hours,
|
||
|
|
then 3 hrly grids through 72 hours, then 6 hrly grids.<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[0*HR]<br>
|
||
|
|
</td>
|
||
|
|
<td style="vertical-align: top;">[(24*HR, 3*HR), (72*HR, 6*HR)]<br>
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
<br>
|
||
|
|
</div>
|
||
|
|
<p><br>
|
||
|
|
</p>
|
||
|
|
</center>
|
||
|
|
</body>
|
||
|
|
</html>
|